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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
32 lines
907 B
YAML
32 lines
907 B
YAML
name: bowtie2_build
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description: Builds bowtie index for reference genome
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keywords:
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- build
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- index
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- fasta
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- genome
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- reference
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tools:
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- bowtie2:
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description: |
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Bowtie 2 is an ultrafast and memory-efficient tool for aligning
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sequencing reads to long reference sequences.
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homepage: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
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documentation: http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml
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doi: 10.1038/nmeth.1923
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input:
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- fasta:
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type: file
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description: Input genome fasta file
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output:
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- index:
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type: file
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description: Bowtie2 genome index files
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pattern: "*.bt2"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@joseespinosa"
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- "@drpatelh"
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