mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
09acfad211
* added the module * updated test.yml * Update modules/gatk4/collectreadcounts/main.nf Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * small fix * tests update * linting * tests update (again) Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
17 lines
No EOL
581 B
Text
17 lines
No EOL
581 B
Text
process {
|
|
|
|
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
|
|
|
|
withName: 'test_gatk4_collectreadcounts_hdf5:GATK4_COLLECTREADCOUNTS'{
|
|
ext.args = "--interval-merging-rule OVERLAPPING_ONLY"
|
|
}
|
|
|
|
withName: 'test_gatk4_collectreadcounts_tsv:GATK4_COLLECTREADCOUNTS' {
|
|
ext.args = "--format TSV --interval-merging-rule OVERLAPPING_ONLY"
|
|
}
|
|
|
|
withName: 'test_gatk4_collectreadcounts_cram:GATK4_COLLECTREADCOUNTS' {
|
|
ext.args = "--format TSV --interval-merging-rule OVERLAPPING_ONLY"
|
|
}
|
|
|
|
} |