nf-core_modules/tests/modules/kleborate/test.yml at 3d7ce9363079da9a79def248218dcc56efcd5410 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-09-21 07:42:05 +00:00

Matthias Hörtenhuber e745e167c1

Fix formatting in yaml files, add yamllint config (#1279 )

* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2022-02-15 11:15:27 +00:00

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 - name: kleborate
   command: nextflow run ./tests/modules/kleborate -entry test_kleborate -c ./tests/config/nextflow.config -c ./tests/modules/kleborate/nextflow.config
   tags:
     - kleborate
   files:
     - path: output/kleborate/test.results.txt
       contains: ["strain", "genome", "scaffolds"]