nf-core_modules/tests/modules/panaroo/run/main.nf
Robert A. Petit III d16f1ea4d7
add module for panaroo, fix pirate tests (#1444)
* add module for panaroo

* update pirate test yaml

* update panaroo test yaml

* update pirate test yaml md5s

* Update main.nf

* Update main.nf

* pin bioperl version
2022-03-24 20:11:04 -06:00

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Text

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { PANAROO_RUN } from '../../../../modules/panaroo/run/main.nf'
workflow test_panaroo_run {
input = [
[ id:'test', single_end:false ], // meta map
[
file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['test1_gff'], checkIfExists: true),
file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['test2_gff'], checkIfExists: true),
file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['test3_gff'], checkIfExists: true)
]
]
PANAROO_RUN ( input )
}