Matthieu Muffato e9bc33485e bugfix: when there is a single input file, stageAs("?/*) returns the path directly, not in a list (#2114) ... * bugfix: when there is a single input file, stageAs("?/*) returns the path directly, not in a list * Added a test * Added a test * Added MD5 checksum Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>		2022-09-28 13:28:52 +01:00
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ampliconclip	Multithreaded samtools commands (#2080)	2022-09-26 17:44:36 +01:00
bam2fq	Remove variable md5sum from the tests	2022-05-05 08:32:45 +02:00
collate	samtools collate module (#2078)	2022-09-21 14:12:59 +01:00
collatefastq	Add samtools/collatefastq module (#1536)	2022-04-20 10:05:17 +02:00
convert	Generalize Bam2Cram do either conversion	2022-05-09 15:22:54 +02:00
depth	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
dict	Added the samtools/dict module (#1922)	2022-07-26 22:13:19 +01:00
faidx	Added the optional .gzi output of "samtools faidx" (#1935)	2022-09-08 13:35:23 +01:00
fastq	update samtools version to 1.15 (#1358)	2022-02-28 12:42:29 +01:00
fixmate	Samtools version update (#1507)	2022-04-11 14:26:28 +02:00
flagstat	Fix/samtools flagstat (#1979)	2022-08-29 13:11:58 +02:00
getrg	new module: samtools/getrg (#2123)	2022-09-28 14:00:10 +02:00
idxstats	samtools/*stats*: use prefix for outputs (#1788)	2022-06-16 13:42:01 +02:00
index	update samtools version to 1.15 (#1358)	2022-02-28 12:42:29 +01:00
markdup	samtools markdup module (#2087)	2022-09-21 15:39:10 +01:00
merge	bugfix: when there is a single input file, stageAs("?/*) returns the path directly, not in a list (#2114)	2022-09-28 13:28:52 +01:00
mpileup	Mpileup intervals (#1955)	2022-08-16 14:16:35 +02:00
sort	Samtools version update (#1507)	2022-04-11 14:26:28 +02:00
stats	fix samtools stats thread usage (#1975)	2022-08-29 12:05:47 +02:00
view	add qname feature to samtools/view (#2115)	2022-09-28 13:04:41 +01:00