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https://github.com/MillironX/nf-core_modules.git
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47cc7a77bf
* add stub for stringtie * add ballgown file to test.yml * add ballgown file to test.yml forward
69 lines
3.2 KiB
YAML
69 lines
3.2 KiB
YAML
- name: stringtie merge forward-strand
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command: nextflow run ./tests/modules/stringtie/merge -entry test_stringtie_forward_merge -c ./tests/config/nextflow.config -c ./tests/modules/stringtie/merge/nextflow.config
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tags:
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- stringtie
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- stringtie/merge
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files:
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- path: output/stringtie/stringtie.merged.gtf
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md5sum: d959eb2fab0db48ded7275e0a2e83c05
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- path: output/stringtie/test.ballgown/e2t.ctab
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md5sum: 9ae42e056c955a88a883e5e917840d77
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- path: output/stringtie/test.ballgown/e_data.ctab
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md5sum: adbedee7b2f84c70362ad6dfa57442b7
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- path: output/stringtie/test.ballgown/i2t.ctab
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md5sum: 658131af118cfb416939044fdb5411de
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- path: output/stringtie/test.ballgown/i_data.ctab
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md5sum: f01d94a7d0dcfad3bfab18ed50dad16c
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- path: output/stringtie/test.ballgown/t_data.ctab
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md5sum: 92a98902784e7406ffe054d2adbabc7c
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- path: output/stringtie/test.coverage.gtf
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- path: output/stringtie/test.gene.abundance.txt
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md5sum: 8bcd8e2730ed3337e2730186dbc184f3
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- path: output/stringtie/test.transcripts.gtf
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md5sum: a914bd55b68a4b5f607738b17861e362
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- name: stringtie merge test_stringtie_reverse_merge
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command: nextflow run ./tests/modules/stringtie/merge -entry test_stringtie_reverse_merge -c ./tests/config/nextflow.config -c ./tests/modules/stringtie/merge/nextflow.config
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tags:
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- stringtie
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- stringtie/merge
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files:
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- path: output/stringtie/stringtie.merged.gtf
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md5sum: 6da479298d73d5b3216d4e1576a2bdf4
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- path: output/stringtie/test.ballgown/e2t.ctab
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md5sum: 9ae42e056c955a88a883e5e917840d77
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- path: output/stringtie/test.ballgown/e_data.ctab
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md5sum: fd8496d3957ade3b2c0853155f9a67da
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- path: output/stringtie/test.ballgown/i2t.ctab
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md5sum: 658131af118cfb416939044fdb5411de
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- path: output/stringtie/test.ballgown/i_data.ctab
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md5sum: f01d94a7d0dcfad3bfab18ed50dad16c
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- path: output/stringtie/test.ballgown/t_data.ctab
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md5sum: 92a98902784e7406ffe054d2adbabc7c
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- path: output/stringtie/test.coverage.gtf
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- path: output/stringtie/test.gene.abundance.txt
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md5sum: f289f41b3ba1b9f0aa05d14408f1a5da
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- path: output/stringtie/test.transcripts.gtf
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md5sum: 9dcdc9577c0fdbb25089eda210267546
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- name: stringtie merge forward-strand stub
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command: nextflow run ./tests/modules/stringtie/merge -entry test_stringtie_forward_merge -c ./tests/config/nextflow.config -c ./tests/modules/stringtie/merge/nextflow.config -stub-run
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tags:
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- stringtie
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- stringtie/merge
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files:
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- path: output/stringtie/stringtie.merged.gtf
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- path: output/stringtie/test.coverage.gtf
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- path: output/stringtie/test.gene.abundance.txt
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- path: output/stringtie/test.transcripts.gtf
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- name: stringtie merge test_stringtie_reverse_merge stub
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command: nextflow run ./tests/modules/stringtie/merge -entry test_stringtie_reverse_merge -c ./tests/config/nextflow.config -c ./tests/modules/stringtie/merge/nextflow.config -stub-run
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tags:
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- stringtie
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- stringtie/merge
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files:
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- path: output/stringtie/stringtie.merged.gtf
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- path: output/stringtie/test.coverage.gtf
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- path: output/stringtie/test.gene.abundance.txt
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- path: output/stringtie/test.transcripts.gtf
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