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54 lines
1.3 KiB
YAML
54 lines
1.3 KiB
YAML
name: "rhocall_annotate"
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description: "Markup VCF file using rho-calls."
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keywords:
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- roh
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- rhocall
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tools:
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- "rhocall":
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description: "Call regions of homozygosity and make tentative UPD calls."
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homepage: "https://github.com/dnil/rhocall"
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documentation: "https://github.com/dnil/rhocall"
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tool_dev_url: "https://github.com/dnil"
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doi: ""
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licence: "['GPL v3']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: vcf file
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pattern: "*.{vcf,vcf.gz}"
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- tbi:
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type: file
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description: vcf index file
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pattern: "*.{tbi}"
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- roh:
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type: file
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description: Bcftools roh style TSV file with CHR,POS,AZ,QUAL
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pattern: "*.{roh}"
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- bed:
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type: file
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description: BED file with AZ windows.
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pattern: "*.{bed}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: vcf file
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pattern: "*.{vcf,vcf.gz}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@ramprasadn"
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