mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 14:13:09 +00:00
e9bc33485e
* bugfix: when there is a single input file, stageAs("?/*) returns the path directly, not in a list
* Added a test
* Added a test
* Added MD5 checksum
Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>
82 lines
3.2 KiB
YAML
82 lines
3.2 KiB
YAML
- name: cat fastq single-end
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_single_end -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test.merged.fastq.gz
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md5sum: f9cf5e375f7de81a406144a2c70cc64d
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- name: cat fastq fastqc_paired_end
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test_2.merged.fastq.gz
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md5sum: 77c8e966e130d8c6b6ec9be52fcb2bda
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- path: ./output/cat/test_1.merged.fastq.gz
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md5sum: f9cf5e375f7de81a406144a2c70cc64d
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- name: cat fastq single-end-same-name
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_single_end_same_name -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test.merged.fastq.gz
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md5sum: 63f817db7a29a03eb538104495556f66
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- name: cat fastq fastqc_paired_end_same_name
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_paired_end_same_name -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test_1.merged.fastq.gz
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md5sum: 63f817db7a29a03eb538104495556f66
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- path: ./output/cat/test_2.merged.fastq.gz
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md5sum: fe9f266f43a6fc3dcab690a18419a56e
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- name: cat fastq single-end-single-file
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_single_end_single_file -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test.merged.fastq.gz
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md5sum: e325ef7deb4023447a1f074e285761af
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- name: cat fastq single-end stub
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_single_end -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config -stub-run
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test.merged.fastq.gz
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- name: cat fastq fastqc_paired_end stub
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config -stub-run
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test_2.merged.fastq.gz
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- path: ./output/cat/test_1.merged.fastq.gz
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- name: cat fastq single-end-same-name stub
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_single_end_same_name -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config -stub-run
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test.merged.fastq.gz
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- name: cat fastq fastqc_paired_end_same_name stub
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_paired_end_same_name -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config -stub-run
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test_1.merged.fastq.gz
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- path: ./output/cat/test_2.merged.fastq.gz
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