mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
3f364e2f31
* add mergemutectstats * correct md5sum * Update modules/gatk4/mergemutectstats/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
name: gatk4_mergemutectstats
|
|
description: Merges mutect2 stats generated on different intervals/regions
|
|
keywords:
|
|
- mutectstats
|
|
- merge
|
|
tools:
|
|
- gatk4:
|
|
description: Genome Analysis Toolkit (GATK4)
|
|
homepage: https://gatk.broadinstitute.org/hc/en-us
|
|
documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
|
|
tool_dev_url: https://github.com/broadinstitute/gatk
|
|
doi: "10.1158/1538-7445.AM2017-3590"
|
|
licence: ["BSD-3-clause"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- stats:
|
|
type: (list of) file(s)
|
|
description: Stats file
|
|
pattern: "*.{stats}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- stats:
|
|
type: file
|
|
description: Stats file
|
|
pattern: "*.vcf.gz.stats"
|
|
|
|
authors:
|
|
- "@FriederikeHanssen"
|