mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-26 23:43:19 -05:00
58 lines
1.6 KiB
YAML
58 lines
1.6 KiB
YAML
name: abacas
|
|
description: contiguate draft genome assembly
|
|
keywords:
|
|
- genome
|
|
- assembly
|
|
- contiguate
|
|
tools:
|
|
- abacas:
|
|
description: |
|
|
ABACAS is intended to rapidly contiguate (align, order, orientate),
|
|
visualize and design primers to close gaps on shotgun assembled
|
|
contigs based on a reference sequence.
|
|
homepage: http://abacas.sourceforge.net/documentation.html
|
|
documentation: http://abacas.sourceforge.net/documentation.html
|
|
tool_dev_url: None
|
|
doi: "10.1093/bioinformatics/btp347"
|
|
licence: ['GPL v2-or-later']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- scaffold:
|
|
type: file
|
|
description: Fasta file containing scaffold
|
|
pattern: "*.{fasta,fa}"
|
|
- fasta:
|
|
type: file
|
|
description: FASTA reference file
|
|
pattern: "*.{fasta,fa}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- results:
|
|
type: files
|
|
description: |
|
|
List containing abacas output files
|
|
[ 'test.abacas.bin', 'test.abacas.fasta', 'test.abacas.gaps',
|
|
'test.abacas.gaps.tab', 'test.abacas.nucmer.delta',
|
|
'test.abacas.nucmer.filtered.delta', 'test.abacas.nucmer.tiling',
|
|
'test.abacas.tab', 'test.abacas.unused.contigs.out',
|
|
'test.abacas.MULTIFASTA.fa' ]
|
|
pattern: "*.{abacas}*"
|
|
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
|
|
authors:
|
|
- "@joseespinosa"
|
|
- "@drpatelh"
|