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https://github.com/MillironX/nf-core_modules.git
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466ab67808
* Fix minimap2 index module * Fix minimap2 index tests * Fix graphmap2 index module * Fix graphmap2 module * Fix ECLint * Fix bedtools bamtobed module * Fix tests for bedtools bamtobed module * Add tag for graphmap2 align module * Fix EClint * Fix qcat module * Add md5sum for graphmap2/align module * Remove non-started test data file * Remove md5sum for graphmap2 align
14 lines
424 B
Text
14 lines
424 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { QCAT } from '../../../software/qcat/main.nf' addParams( options: [:] )
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workflow test_qcat {
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input = [ [ id:'test' ], // meta map
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[ file("https://github.com/nf-core/test-datasets/raw/nanoseq/fastq/nondemultiplexed/sample_nobc_dx.fastq.gz", checkIfExists: true) ]
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]
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barcode_kit = 'NBD103/NBD104'
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QCAT ( input, barcode_kit )
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}
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