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15 lines
587 B
Text
15 lines
587 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BEDTOOLS_BAMTOBED } from '../../../../software/bedtools/bamtobed/main.nf' addParams( options: [:] )
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workflow test_bedtools_bamtobed {
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input = [ [ id:'test'], //meta map
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file(params.test_data['sarscov2']['genome']['genome_sizes'], checkIfExists: true),
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file(params.test_data['sarscov2']['nanopore']['test_sorted_bam'], checkIfExists: true),
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file(params.test_data['sarscov2']['nanopore']['test_sorted_bam_bai'], checkIfExists: true)
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]
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BEDTOOLS_BAMTOBED ( input )
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}
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