mirror of
https://github.com/MillironX/nf-core_modules.git
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b3e9b88e80
* Added: csi output to TABIX * Added: tests for csi * Fix tiddit/sv (#1580) * Fix fasta ref option for TIDDIT_SV * Add md5sum's to tiddit/sv tests Co-authored-by: Daniel Cooke <dcooke@well.ox.ac.uk> * Fix: prettier issues Co-authored-by: Daniel Cooke <daniel.cooke@invitae.com> Co-authored-by: Daniel Cooke <dcooke@well.ox.ac.uk>
45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
name: tabix_tabix
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description: create tabix index from a sorted bgzip tab-delimited genome file
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keywords:
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- index
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- tabix
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- vcf
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tools:
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- tabix:
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description: Generic indexer for TAB-delimited genome position files.
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homepage: https://www.htslib.org/doc/tabix.html
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documentation: https://www.htslib.org/doc/tabix.1.html
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doi: 10.1093/bioinformatics/btq671
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- tab:
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type: file
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description: TAB-delimited genome position file compressed with bgzip
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pattern: "*.{bed.gz,gff.gz,sam.gz,vcf.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- tbi:
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type: file
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description: tabix index file
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pattern: "*.{tbi}"
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- csi:
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type: file
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description: coordinate sorted index file
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pattern: "*.{csi}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@joseespinosa"
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- "@drpatelh"
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- "@maxulysse"
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