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29 lines
847 B
Text
29 lines
847 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GAMMA_GAMMA } from '../../../../modules/gamma/gamma/main.nf'
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workflow test_unzip {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['bacteroides_fragilis']['illumina']['test1_contigs_fa_gz'], checkIfExists: true),
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]
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db = [ file("https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/srst2/ResGANNCBI_20210507_srst2.fasta", checkIfExists: true), ]
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GAMMA_GAMMA ( input, db )
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}
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workflow test_gamma {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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]
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db = [ file(params.test_data['sarscov2']['genome']['transcriptome_fasta'], checkIfExists: true) ]
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GAMMA_GAMMA ( input, db )
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}
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