nf-core_modules/tests/modules/samtools/view/nextflow.config at 402631fdaa9394342579abc405df55f7935ecfba - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-14 05:43:08 +00:00

Priyanka Surana 402631fdaa

Update samtools view (#2096 )

* samtools view update

* remove csi output

* prettier

* update meta

2022-09-23 13:03:59 +01:00

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 process {
     publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
     withName: 'test_samtools_view_convert:SAMTOOLS_VIEW' {
         ext.args = "--output-fmt bam"
     }
 }