mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
15d39f841a
* add amrfinderplus module * Update test.yml * Update main.nf * Update main.nf * Update test.yml * Update test.yml * Update test.yml * Update main.nf * Update meta.yml * Update meta.yml * Update main.nf * Update test.yml * Update test.yml
17 lines
535 B
Text
17 lines
535 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { AMRFINDERPLUS_UPDATE } from '../../../../modules/amrfinderplus/update/main.nf'
|
|
include { AMRFINDERPLUS_RUN } from '../../../../modules/amrfinderplus/run/main.nf'
|
|
|
|
workflow test_amrfinderplus_run {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['haemophilus_influenzae']['genome']['genome_fna_gz'], checkIfExists: true)
|
|
]
|
|
|
|
AMRFINDERPLUS_UPDATE ( )
|
|
AMRFINDERPLUS_RUN ( input, AMRFINDERPLUS_UPDATE.out.db )
|
|
}
|