nf-core_modules/.github/workflows/samtools_flagstat.yml
2020-12-01 11:40:16 -06:00

36 lines
908 B
YAML

name: samtools_flagstat
on:
push:
paths:
- software/samtools/flagstat/**
- .github/workflows/samtools_flagstat.yml
- tests/software/samtools/**
pull_request:
paths:
- software/samtools/flagstat/**
- .github/workflows/samtools_flagstat.yml
- tests/software/samtools/**
jobs:
ci_test:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
export NXF_VER="20.07.1"
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- run: pytest --tag samtools_flagstat --symlink --wt 2