mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
52 lines
1.4 KiB
YAML
52 lines
1.4 KiB
YAML
name: diamond_blastp
|
|
description: Queries a DIAMOND database using blastp mode
|
|
keywords:
|
|
- fasta
|
|
- diamond
|
|
- blastp
|
|
- DNA sequence
|
|
tools:
|
|
- diamond:
|
|
description: Accelerated BLAST compatible local sequence aligner
|
|
homepage: https://github.com/bbuchfink/diamond
|
|
documentation: https://github.com/bbuchfink/diamond/wiki
|
|
tool_dev_url: https://github.com/bbuchfink/diamond
|
|
doi: "doi:10.1038/s41592-021-01101-x"
|
|
licence: ["GPL v3.0"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: Input fasta file containing query sequences
|
|
pattern: "*.{fa,fasta}"
|
|
- db:
|
|
type: directory
|
|
description: Directory containing the protein blast database
|
|
pattern: "*"
|
|
- outext:
|
|
type: string
|
|
description: |
|
|
Specify the type of output file to be generated. `blast` corresponds to
|
|
BLAST pairwise format. `xml` corresponds to BLAST xml format.
|
|
`txt` corresponds to to BLAST tabular format. `tsv` corresponds to
|
|
taxonomic classification format.
|
|
pattern: "blast|xml|txt|daa|sam|tsv|paf"
|
|
|
|
output:
|
|
- txt:
|
|
type: file
|
|
description: File containing blastp hits
|
|
pattern: "*.{blastp.txt}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@spficklin"
|
|
- "@jfy133"
|