nf-core_modules/tests/modules/diamond/blastx/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { DIAMOND_MAKEDB } from '../../../../modules/diamond/makedb/main.nf'
include { DIAMOND_BLASTX } from '../../../../modules/diamond/blastx/main.nf'
workflow test_diamond_blastx {
db = [ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
fasta = [ file(params.test_data['sarscov2']['genome']['transcriptome_fasta'], checkIfExists: true) ]
outext = 'txt'
DIAMOND_MAKEDB ( db )
DIAMOND_BLASTX ( [ [id:'test'], fasta ], DIAMOND_MAKEDB.out.db, outext )
}
workflow test_diamond_blastx_daa {
db = [ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
fasta = [ file(params.test_data['sarscov2']['genome']['transcriptome_fasta'], checkIfExists: true) ]
outext = 'daa'
DIAMOND_MAKEDB ( db )
DIAMOND_BLASTX ( [ [id:'test'], fasta ], DIAMOND_MAKEDB.out.db, outext )
}