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https://github.com/MillironX/nf-core_modules.git
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b3e9b88e80
* Added: csi output to TABIX * Added: tests for csi * Fix tiddit/sv (#1580) * Fix fasta ref option for TIDDIT_SV * Add md5sum's to tiddit/sv tests Co-authored-by: Daniel Cooke <dcooke@well.ox.ac.uk> * Fix: prettier issues Co-authored-by: Daniel Cooke <daniel.cooke@invitae.com> Co-authored-by: Daniel Cooke <dcooke@well.ox.ac.uk>
21 lines
376 B
Text
21 lines
376 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: TABIX_BED {
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ext.args = '-p bed'
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}
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withName: TABIX_GFF {
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ext.args = '-p gff'
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}
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withName: TABIX_VCF_TBI {
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ext.args = '-p vcf'
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}
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withName: TABIX_VCF_CSI {
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ext.args = '-p vcf --csi'
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}
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}
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