nf-core_modules/tests/modules/tabix/tabix/nextflow.config
Praveen Raj S b3e9b88e80
csi output in TABIX (#1579)
* Added: csi output to TABIX

* Added: tests for csi

* Fix tiddit/sv (#1580)

* Fix fasta ref option for TIDDIT_SV

* Add md5sum's to tiddit/sv tests

Co-authored-by: Daniel Cooke <dcooke@well.ox.ac.uk>

* Fix: prettier issues

Co-authored-by: Daniel Cooke <daniel.cooke@invitae.com>
Co-authored-by: Daniel Cooke <dcooke@well.ox.ac.uk>
2022-04-28 14:41:01 +02:00

21 lines
376 B
Text

process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
withName: TABIX_BED {
ext.args = '-p bed'
}
withName: TABIX_GFF {
ext.args = '-p gff'
}
withName: TABIX_VCF_TBI {
ext.args = '-p vcf'
}
withName: TABIX_VCF_CSI {
ext.args = '-p vcf --csi'
}
}