mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
16 lines
472 B
Text
16 lines
472 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { QUALIMAP_BAMQC } from '../../../../software/qualimap/bamqc/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_qualimap_bamqc {
|
|
|
|
def input = []
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file("${launchDir}/tests/data/bam/test.paired_end.sorted.bam", checkIfExists: true) ]
|
|
def gff = file("dummy_file.txt")
|
|
def use_gff = false
|
|
|
|
QUALIMAP_BAMQC ( input, gff, use_gff )
|
|
}
|