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1a4c7cec1b
* New modules added: issues #200 and #310 * Update main.nf * Update meta.yml * Update tests/modules/gatk4/genotypegvcfs/main.nf * Apply suggestions from code review * Update main.nf * Updating tests for GenomicsDB input and adding the path for this test resource to test_data.config * Some minor changes on one of the test files I forgot to include Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: GCJMackenzie <43276267+GCJMackenzie@users.noreply.github.com>
45 lines
1.1 KiB
Text
45 lines
1.1 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GATK4_INDEXFEATUREFILE } from '../../../../modules/gatk4/indexfeaturefile/main.nf' addParams( options: [:] )
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workflow test_gatk4_indexfeaturefile_bed {
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input = [
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[ id:'test' ], // meta map
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file(params.test_data['homo_sapiens']['genome']['genome_bed'], checkIfExists: true)
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]
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GATK4_INDEXFEATUREFILE ( input )
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}
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workflow test_gatk4_indexfeaturefile_bed_gz {
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input = [
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[ id:'test' ], // meta map
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file(params.test_data['homo_sapiens']['genome']['genome_bed_gz'], checkIfExists: true)
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]
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GATK4_INDEXFEATUREFILE ( input )
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}
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workflow test_gatk4_indexfeaturefile_vcf {
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input = [
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[ id:'test' ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf'], checkIfExists: true)
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]
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GATK4_INDEXFEATUREFILE ( input )
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}
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workflow test_gatk4_indexfeaturefile_vcf_gz {
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input = [
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[ id:'test' ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_gz'], checkIfExists: true)
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]
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GATK4_INDEXFEATUREFILE ( input )
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}
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