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1a4c7cec1b
* New modules added: issues #200 and #310 * Update main.nf * Update meta.yml * Update tests/modules/gatk4/genotypegvcfs/main.nf * Apply suggestions from code review * Update main.nf * Updating tests for GenomicsDB input and adding the path for this test resource to test_data.config * Some minor changes on one of the test files I forgot to include Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: GCJMackenzie <43276267+GCJMackenzie@users.noreply.github.com>
39 lines
1.6 KiB
YAML
39 lines
1.6 KiB
YAML
# We can't use an md5sum or check file contents because:
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# a) the path to the file is embedded inside it,
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# b) the file is binary so we can't check for text inside it.
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- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_bed
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command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_bed -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/indexfeaturefile
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files:
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- path: output/gatk4/genome.bed.idx
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- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_bed_gz
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command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_bed_gz -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/indexfeaturefile
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files:
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- path: output/gatk4/genome.bed.gz.tbi
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md5sum: 2eb6ed0a0b049efe4caa1413089dcd74
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# We can't use an md5sum or check file contents because:
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# a) the path to the file is embedded inside it,
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# b) the file is binary so we can't check for text inside it.
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- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_vcf
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command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_vcf -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/indexfeaturefile
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files:
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- path: output/gatk4/test.genome.vcf.idx
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- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_vcf_gz
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command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_vcf_gz -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/indexfeaturefile
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files:
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- path: output/gatk4/test.genome.vcf.gz.tbi
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md5sum: ea03cd1d1f178eefa656787537053c37
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