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https://github.com/MillironX/nf-core_modules.git
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906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
35 lines
880 B
YAML
35 lines
880 B
YAML
name: salmon_index
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description: Create index for salmon
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keywords:
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- index
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- fasta
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- genome
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- reference
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tools:
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- salmon:
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description: |
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Salmon is a tool for wicked-fast transcript quantification from RNA-seq data
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homepage: https://salmon.readthedocs.io/en/latest/salmon.html
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manual: https://salmon.readthedocs.io/en/latest/salmon.html
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doi: 10.1038/nmeth.4197
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input:
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- genome_fasta:
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type: file
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description: Fasta file of the reference genome
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- transcriptome_fasta:
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type: file
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description: Fasta file of the reference transcriptome
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output:
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- index:
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type: directory
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description: Folder containing the star index files
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pattern: "salmon"
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- version:
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type: file
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description: File containing software version
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pattern: "versions.yml"
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authors:
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- "@kevinmenden"
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- "@drpatelh"
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