nf-core_modules/tests/software/gatk4/markduplicates/test.yml at 4422454ba5b3adaf4a6cef7e9d10164a752260bc - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-14 05:43:08 +00:00

Harshil Patel 5e18e36895

Update and check tests are running for all modules (#420 )

* Fixes for PR 371

* Fix tags

* Add md5sum

* Add md5sums for stringtie

* Fix tests for modules where subtool = build

* Fix pytest_software name conflicts

* Change _ to / in test.yml tags

* Nope...that didnt work

* Fix sequenzautils/bam2seqz tests

2021-04-09 13:47:05 +01:00

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YAML

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 - name: gatk4 markduplicates test_gatk4_markduplicates
   command: nextflow run tests/software/gatk4/markduplicates -entry test_gatk4_markduplicates -c tests/config/nextflow.config
   tags:
     - gatk4
     - gatk4/markduplicates
   files:
     - path: output/gatk4/test.bam
       md5sum: b58d47345e3ce5825c0641c9d6e6cb7a