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51 lines
2.1 KiB
YAML
51 lines
2.1 KiB
YAML
- name: srst2 srst2 test_srst2_srst2_exit #Testing pipeline exit when not meta.db
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command: nextflow run tests/modules/srst2/srst2 -entry test_srst2_srst2_exit -c tests/config/nextflow.config
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tags:
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- srst2/srst2
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- srst2
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exit_code: 1
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- name: srst2 srst2 test_srst2_srst2_mlst
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command: nextflow run tests/modules/srst2/srst2 -entry test_srst2_srst2_mlst -c tests/config/nextflow.config
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tags:
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- srst2/srst2
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- srst2
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files:
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- path: output/srst2/test__SRR9067271.MLST_DB.pileup
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contains:
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- "dnaJ-1 2 C 17 .........,....... FFFFFFFFFFFFFFFFF"
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- path: output/srst2/test__SRR9067271.MLST_DB.sorted.bam
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- path: output/srst2/test__mlst__MLST_DB__results.txt
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md5sum: ec1b1f69933401d67c57f64cad11a098
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- path: output/srst2/versions.yml
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md5sum: a0c256a2fd3636069710b8ef22ee5ea7
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- name: srst2 srst2 test_srst2_srst2_paired_end
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command: nextflow run tests/modules/srst2/srst2 -entry test_srst2_srst2_paired_end -c tests/config/nextflow.config
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tags:
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- srst2/srst2
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- srst2
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files:
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- path: output/srst2/test__genes__resFinder_20180221_srst2__results.txt
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md5sum: 099aa6cacec5524b311f606debdfb3a9
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- path: output/srst2/test__test1.resFinder_20180221_srst2.pileup
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md5sum: 64b512ff495b828c456405ec7b676ad1
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- path: output/srst2/test__test1.resFinder_20180221_srst2.sorted.bam
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- path: output/srst2/versions.yml
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md5sum: b446a70f1a2b4f60757829bcd744a214
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- name: srst2 srst2 test_srst2_srst2_single_end
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command: nextflow run tests/modules/srst2/srst2 -entry test_srst2_srst2_single_end -c tests/config/nextflow.config
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tags:
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- srst2/srst2
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- srst2
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files:
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- path: output/srst2/test__fullgenes__resFinder_20180221_srst2__results.txt
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md5sum: d0762ef8c38afd0e0a34cce52ed1a3db
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- path: output/srst2/test__genes__resFinder_20180221_srst2__results.txt
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md5sum: b8850c6644406d8b131e471ecc3f9013
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- path: output/srst2/test__test1_1.resFinder_20180221_srst2.pileup
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md5sum: 5f6279dc8124aa762a9dfe3d7a871277
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- path: output/srst2/test__test1_1.resFinder_20180221_srst2.sorted.bam
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- path: output/srst2/versions.yml
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md5sum: 790fe00493c6634d17801a930073218b
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