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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
41 lines
1.7 KiB
YAML
41 lines
1.7 KiB
YAML
- name: bowtie2 align single-end
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command: nextflow run ./tests/modules/bowtie2/align -entry test_bowtie2_align_single_end -c tests/config/nextflow.config
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tags:
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- bowtie2
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- bowtie2/align
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files:
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- path: ./output/bowtie2/test.bam
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- path: ./output/bowtie2/test.bowtie2.log
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- path: ./output/index/bowtie2/genome.3.bt2
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md5sum: 4ed93abba181d8dfab2e303e33114777
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- path: ./output/index/bowtie2/genome.2.bt2
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md5sum: 47b153cd1319abc88dda532462651fcf
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- path: ./output/index/bowtie2/genome.1.bt2
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md5sum: cbe3d0bbea55bc57c99b4bfa25b5fbdf
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- path: ./output/index/bowtie2/genome.4.bt2
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md5sum: c25be5f8b0378abf7a58c8a880b87626
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- path: ./output/index/bowtie2/genome.rev.1.bt2
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md5sum: 52be6950579598a990570fbcf5372184
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- path: ./output/index/bowtie2/genome.rev.2.bt2
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md5sum: e3b4ef343dea4dd571642010a7d09597
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- name: bowtie2 align paired-end
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command: nextflow run ./tests/modules/bowtie2/align -entry test_bowtie2_align_paired_end -c tests/config/nextflow.config
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tags:
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- bowtie2
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- bowtie2/align
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files:
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- path: ./output/bowtie2/test.bam
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- path: ./output/bowtie2/test.bowtie2.log
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- path: ./output/index/bowtie2/genome.3.bt2
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md5sum: 4ed93abba181d8dfab2e303e33114777
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- path: ./output/index/bowtie2/genome.2.bt2
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md5sum: 47b153cd1319abc88dda532462651fcf
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- path: ./output/index/bowtie2/genome.1.bt2
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md5sum: cbe3d0bbea55bc57c99b4bfa25b5fbdf
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- path: ./output/index/bowtie2/genome.4.bt2
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md5sum: c25be5f8b0378abf7a58c8a880b87626
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- path: ./output/index/bowtie2/genome.rev.1.bt2
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md5sum: 52be6950579598a990570fbcf5372184
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- path: ./output/index/bowtie2/genome.rev.2.bt2
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md5sum: e3b4ef343dea4dd571642010a7d09597
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