nf-core_modules/tests/modules/bwa/samse/test.yml at 45985ff6f01c6e2e229b665ba45b159bd925513d - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-14 05:43:08 +00:00

James A. Fellows Yates 8a2f01c416

module: bwa/samse (#626 )

* Specify more guidelines on input channels

* Linting

* Updates based on code review

* Update README.md

* Fix broken sentence

* Add bwa/aln module

* Also output reads as required with SAI

* Add bwa samse

* Fix container paths

* remove TODO comment

* Updated based on code from from @grst on bwa/sampe

* Clarify output docs

2021-08-02 15:21:23 +02:00

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 - name: bwa samse
   command: nextflow run ./tests/modules/bwa/samse -entry test_bwa_samse -c tests/config/nextflow.config
   tags:
     - bwa
     - bwa/samse
   files:
     - path: output/bwa/test.bam
       md5sum: 27eb91146e45dee65664c18596be4262