mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
374d81e0b3
* readcounter module for hmmcopy * Changed version number * Fix indentation * Update main.nf * Update modules/hmmcopy/readcounter/main.nf Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com> Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com>
14 lines
560 B
Text
14 lines
560 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { HMMCOPY_READCOUNTER } from '../../../../modules/hmmcopy/readcounter/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_hmmcopy_readcounter {
|
|
|
|
input = [ [ id:'test'], // meta map
|
|
[ file(params.test_data['homo_sapiens']['illumina']['test_paired_end_recalibrated_sorted_bam'], checkIfExists: true)],
|
|
[ file(params.test_data['homo_sapiens']['illumina']['test_paired_end_recalibrated_sorted_bam_bai'], checkIfExists: true)]
|
|
]
|
|
HMMCOPY_READCOUNTER ( input )
|
|
}
|