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754db250a0
* remove params statement * add manta/somatic module * fix strelka target bed thing * removing checksums should make this pass * Update modules/manta/somatic/main.nf Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com> * fix indentation Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
18 lines
816 B
YAML
18 lines
816 B
YAML
- name: manta somatic test_manta_somatic
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command: nextflow run tests/modules/manta/somatic -entry test_manta_somatic -c tests/config/nextflow.config
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tags:
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- manta/somatic
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- manta
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files:
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- path: output/manta/test.candidate_small_indels.vcf.gz
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- path: output/manta/test.candidate_small_indels.vcf.gz.tbi
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md5sum: 4cb176febbc8c26d717a6c6e67b9c905
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- path: output/manta/test.candidate_sv.vcf.gz
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- path: output/manta/test.candidate_sv.vcf.gz.tbi
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md5sum: 4cb176febbc8c26d717a6c6e67b9c905
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- path: output/manta/test.diploid_sv.vcf.gz
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- path: output/manta/test.diploid_sv.vcf.gz.tbi
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md5sum: 4cb176febbc8c26d717a6c6e67b9c905
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- path: output/manta/test.somatic_sv.vcf.gz
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- path: output/manta/test.somatic_sv.vcf.gz.tbi
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md5sum: 4cb176febbc8c26d717a6c6e67b9c905
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