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527ccdb419
* add racon * add miniasm module * edit miniasm module * edit miniasm module * Update tests/modules/racon/main.nf Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> * Update tests/modules/racon/test.yml Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> * Update modules/miniasm/meta.yml Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> * Update main.nf Add some spaces. * Update meta.yml Correct DOI * Update main.nf * Apply suggestions from code review * Update tests/modules/miniasm/test.yml Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
15 lines
503 B
Text
15 lines
503 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MINIASM } from '../../../modules/miniasm/main.nf' addParams( options: [suffix:'.assembly'] )
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workflow test_miniasm {
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input = [ [ id:'test', single_end:true ], // meta map
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file(params.test_data['bacteroides_fragilis']['nanopore']['test_fastq_gz'], checkIfExists: true),
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file(params.test_data['bacteroides_fragilis']['nanopore']['overlap_paf'], checkIfExists: true)
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]
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MINIASM ( input )
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}
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