mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
16 lines
481 B
Text
16 lines
481 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { NANOLYSE } from '../../../modules/nanolyse/main.nf' addParams( options: [suffix: '.clean'] )
|
|
|
|
workflow test_nanolyse {
|
|
input = [
|
|
[ id:'test' ], // meta map
|
|
[ file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true)]
|
|
]
|
|
|
|
fasta = file("https://github.com/wdecoster/nanolyse/raw/master/reference/lambda.fasta.gz", checkIfExists: true)
|
|
|
|
NANOLYSE ( input, fasta )
|
|
}
|