mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
45985ff6f0
* Updated module to fit nf-core2.2dev0 templates * Updated module to fit nf-core2.2dev0 templates * Linked test files to nf-core/test-dataset branch:raredisease raw files * Change order of input: vcf and tbi with meta, ped without * Change order of input: vcf and tbi with meta, ped without/adapt test * Change order of input: vcf and tbi with meta, ped without/adapt test, bugfix * Indent and rename files * Update modules/peddy/main.nf Removed newline Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update pytest_modules.yml * Update main.nf * Apply suggestions from code review Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
17 lines
560 B
Text
17 lines
560 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { PEDDY } from '../../../modules/peddy/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_peddy {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ],
|
|
file(params.test_data['homo_sapiens']['genome']['justhusky_minimal_vcf_gz'], checkIfExists: true),
|
|
file(params.test_data['homo_sapiens']['genome']['justhusky_minimal_vcf_gz_tbi'], checkIfExists: true)
|
|
]
|
|
ped = file(params.test_data['homo_sapiens']['genome']['justhusky_ped'], checkIfExists: true)
|
|
|
|
PEDDY ( input , ped )
|
|
}
|