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4e5b6ed843
* Fix picard/markduplicates with new options syntax * Delete md5sum for bam files and add contains for metrics.txt Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
21 lines
751 B
YAML
21 lines
751 B
YAML
- name: picard markduplicates sorted bam
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command: nextflow run ./tests/modules/picard/markduplicates -entry test_picard_markduplicates_sorted_bam -c tests/config/nextflow.config
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tags:
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- picard
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- picard/markduplicates
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files:
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- path: ./output/picard/test.MarkDuplicates.metrics.txt
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contains:
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- "1.0 97 97"
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- path: ./output/picard/test.bam
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- name: picard markduplicates unsorted bam
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command: nextflow run ./tests/modules/picard/markduplicates -entry test_picard_markduplicates_unsorted_bam -c tests/config/nextflow.config
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tags:
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- picard
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- picard/markduplicates
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files:
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- path: ./output/picard/test.MarkDuplicates.metrics.txt
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contains:
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- "1.0 97 97"
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- path: ./output/picard/test.bam
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