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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
16 lines
476 B
Text
16 lines
476 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PLASMIDID } from '../../../modules/plasmidid/main.nf' addParams ( options: ['args' : '-k 0.8'] )
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workflow test_plasmidid {
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contigs = [ [ id:'test' ], // meta map
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file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true)
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]
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fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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PLASMIDID ( contigs, fasta )
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}
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