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0b0f87c2f7
* add module main porechop * update porechop main * add porechop functions * update meta porechop * add test main porechop * add porechop pytest yml * add porechop test.yml * Update modules/porechop/meta.yml Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * re-add porechop avoid conflict * Update modules/porechop/meta.yml Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * fix prefix suffix Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
13 lines
380 B
Text
13 lines
380 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PORECHOP } from '../../../modules/porechop/main.nf' addParams( options: [args: '', suffix: '_porechop'] )
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workflow test_porechop {
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input = [ [ id:'test', single_end:true ], // meta map
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file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true) ]
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PORECHOP ( input )
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}
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