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0ba88fb869
* add module roary * Update meta.yml * Update meta.yml * Update meta.yml * Update meta.yml * Update main.nf * Update meta.yml * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
39 lines
1.8 KiB
YAML
39 lines
1.8 KiB
YAML
- name: roary test_roary
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command: nextflow run tests/modules/roary -entry test_roary -c tests/config/nextflow.config
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tags:
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- roary
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files:
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- path: output/roary/results/accessory.header.embl
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contains: ['ID Genome standard; DNA; PRO; 1234 BP.']
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- path: output/roary/results/accessory.tab
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contains: ['FT']
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- path: output/roary/results/accessory_binary_genes.fa
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md5sum: 0baeea4947bf17a2bf29d43a44f0278f
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- path: output/roary/results/accessory_binary_genes.fa.newick
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md5sum: b1f8c76ab231bd38b850c1f8d3c1584b
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- path: output/roary/results/accessory_graph.dot
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contains: ['/* list of nodes */']
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- path: output/roary/results/blast_identity_frequency.Rtab
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md5sum: 829baa25c3fad94b1af207265452a692
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- path: output/roary/results/clustered_proteins
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contains: ['JKHLNHAL_00087']
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- path: output/roary/results/core_accessory.header.embl
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contains: ['ID Genome standard; DNA; PRO; 1234 BP.']
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- path: output/roary/results/core_accessory.tab
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contains: ['FT /taxa="GCF_000292685 GCF_000298385 GCF_002849995"']
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- path: output/roary/results/core_accessory_graph.dot
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contains: ['/* list of nodes */']
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- path: output/roary/results/gene_presence_absence.Rtab
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contains: ['Gene']
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- path: output/roary/results/gene_presence_absence.csv
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contains: ['"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences"']
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- path: output/roary/results/number_of_conserved_genes.Rtab
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contains: ['279']
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- path: output/roary/results/number_of_genes_in_pan_genome.Rtab
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contains: ['279']
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- path: output/roary/results/number_of_new_genes.Rtab
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contains: ['279']
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- path: output/roary/results/number_of_unique_genes.Rtab
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contains: ['279']
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- path: output/roary/results/summary_statistics.txt
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md5sum: 3921b5445df6a7ed59408119b8860a58
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