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2af071ed0d
* ci: Remove pytest_subworkflows * ci(bam_sort_samtools): Depend on paths-filter instead of pytest-workflow Co-authored-by: Harshil Patel <drpatelhh@gmail.com> Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * ci: Revert back to one job branch * ci(align_bowtie2): Run tests that depend on bam_sort_samtools * ci: Fix anchor not being created yet * ci: Update sra_fastq tags and pytest_modules * fix(bam_sort_samtools): Update nextflow.config with params * test(subworkflows): Update gatk_create_som_pon tags * ci: Point to subworkflow_hacks branch of nf-core tools Co-authored-by: Harshil Patel <drpatelhh@gmail.com> Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
21 lines
987 B
YAML
21 lines
987 B
YAML
- name: sratools fasterqdump test_sratools_fasterqdump_single_end
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command: nextflow run tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_single_end -c tests/config/nextflow.config
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tags:
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- subworkflows/sra_fastq
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files:
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- path: output/sratools/SRR13255544.fastq.gz
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md5sum: 1054c7b71884acdb5eed8a378f18be82
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- path: output/untar/SRR13255544/SRR13255544.sra
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md5sum: 466d05dafb2eec672150754168010b4d
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- name: sratools fasterqdump test_sratools_fasterqdump_paired_end
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command: nextflow run tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_paired_end -c tests/config/nextflow.config
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tags:
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- subworkflows/sra_fastq
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files:
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- path: output/sratools/SRR11140744_1.fastq.gz
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md5sum: 193809c784a4ea132ab2a253fa4f55b6
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- path: output/sratools/SRR11140744_2.fastq.gz
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md5sum: 3e3b3af3413f50a1685fd7b3f1456d4e
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- path: output/untar/SRR11140744/SRR11140744.sra
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md5sum: 065666caf5b2d5dfb0cb25d5f3abe659
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