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7be60774b6
* add module for tbprofiler * Update test.yml * Update meta.yml Co-authored-by: Abhinav Sharma <abhi18av@users.noreply.github.com> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
24 lines
1,005 B
Text
24 lines
1,005 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { TBPROFILER_PROFILE as TBPROFILER_PROFILE_ILLUMINA } from '../../../../modules/tbprofiler/profile/main.nf' addParams( options: [args: '--platform illumina'] )
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include { TBPROFILER_PROFILE as TBPROFILER_PROFILE_NANOPORE} from '../../../../modules/tbprofiler/profile/main.nf' addParams( options: [args: '--platform nanopore'] )
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workflow test_tbprofiler_profile_illumina {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ] ]
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TBPROFILER_PROFILE_ILLUMINA ( input )
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}
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workflow test_tbprofiler_profile_nanopore {
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input = [ [ id:'test', single_end:true ], // meta map
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file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true) ]
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TBPROFILER_PROFILE_NANOPORE ( input )
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}
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