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https://github.com/MillironX/nf-core_modules.git
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466ab67808
* Fix minimap2 index module * Fix minimap2 index tests * Fix graphmap2 index module * Fix graphmap2 module * Fix ECLint * Fix bedtools bamtobed module * Fix tests for bedtools bamtobed module * Add tag for graphmap2 align module * Fix EClint * Fix qcat module * Add md5sum for graphmap2/align module * Remove non-started test data file * Remove md5sum for graphmap2 align
29 lines
892 B
YAML
29 lines
892 B
YAML
name: graphmap2_index
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description: A versatile pairwise aligner for genomic and spliced nucleotide sequences
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keywords:
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- index
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- fasta
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- reference
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tools:
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- graphmap2:
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description: |
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A versatile pairwise aligner for genomic and spliced nucleotide sequences.
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homepage: https://github.com/lbcb-sci/graphmap2
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documentation: https://github.com/lbcb-sci/graphmap2#graphmap2---a-highly-sensitive-and-accurate-mapper-for-long-error-prone-reads
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input:
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- fasta:
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type: file
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description: |
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Reference database in FASTA format.
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output:
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- gmidx:
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type: file
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description: Graphmap2 fasta index in gmidx format
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pattern: "*.gmidx"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@yuukiiwa"
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- "@drpatelh"
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