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* add software/pairtools * create a branch for pairtools/select * fix the different output of conda and docker. * rmove the md5sum for gzip files. * Update software/pairtools/select/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * update test file and documentation. Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
44 lines
1.1 KiB
YAML
44 lines
1.1 KiB
YAML
name: pairtools_select
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description: Select pairs according to given condition by options.args
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keywords:
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- select
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tools:
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- pairtools:
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description: CLI tools to process mapped Hi-C data
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homepage: http://pairtools.readthedocs.io/
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documentation: http://pairtools.readthedocs.io/
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tool_dev_url: https://github.com/mirnylab/pairtools
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doi: ""
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- input:
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type: file
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description: pairs file
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- selected:
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type: file
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description: Selected pairs file
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pattern: "*.{selected.pairs.gz}"
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- unselected:
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type: file
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description: Rest pairs file.
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pattern: "*.{unselected.pairs.gz}"
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authors:
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- "@jianhong"
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