nf-core_modules/tests/modules/fgbio/fastqtobam/test.yml
Francesco L a0bc08732c
Rewritten module fgbio/fastqtobam (#916)
* added template for fastqtobam

* porting old code into new template

* update with missing getprocessname function

* test completed - updating all

* fixed linting issues

* improved reading

Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>

Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
2021-10-27 19:06:06 +02:00

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YAML

- name: fgbio fastqtobam test_fgbio_fastqtobam
command: nextflow run tests/modules/fgbio/fastqtobam -entry test_fgbio_fastqtobam -c tests/config/nextflow.config
tags:
- fgbio/fastqtobam
- fgbio
files:
- path: output/fgbio/test_umi_converted.bam
md5sum: 9510735554e5eff29244077a72075fb6
- path: output/fgbio/versions.yml
md5sum: 524815093b96759060d0d800fc6a3f25