mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
466ab67808
* Fix minimap2 index module * Fix minimap2 index tests * Fix graphmap2 index module * Fix graphmap2 module * Fix ECLint * Fix bedtools bamtobed module * Fix tests for bedtools bamtobed module * Add tag for graphmap2 align module * Fix EClint * Fix qcat module * Add md5sum for graphmap2/align module * Remove non-started test data file * Remove md5sum for graphmap2 align
37 lines
1.1 KiB
YAML
37 lines
1.1 KiB
YAML
name: bedtools_bamtobed
|
|
description: Converts a bam file to a bed12 file.
|
|
keywords:
|
|
- bam
|
|
- bed
|
|
tools:
|
|
- bedtools:
|
|
description: |
|
|
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
|
|
documentation: https://bedtools.readthedocs.io/en/latest/content/tools/complement.html
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: Input BAM file
|
|
pattern: "*.{bam}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bed:
|
|
type: file
|
|
description: Bed file containing genomic intervals.
|
|
pattern: "*.{bed}"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@yuukiiwa"
|
|
- "@drpatelh"
|