nf-core_modules/tests/software/samtools/flagstat/test.yml at 466ab67808406c9ea4b2bab4617900954a21d275 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-09-22 00:02:04 +00:00

Edmund Miller a3684d9594

Lint modules ci (#389 )

* ci: Add modules lint step

Moved it ahead of the nextflow install so ideally it'll fail before we
bother doing any more setup

* ci: _ => /

* Update tests/config/pytest_software.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-04-08 09:10:52 +01:00

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YAML

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 - name: samtools flagstat
   command: nextflow run ./tests/software/samtools/flagstat -entry test_samtools_flagstat -c tests/config/nextflow.config
   tags:
     - samtools
     - samtools/flagstat
   files:
     - path: ./output/samtools/test_paired_end.sorted.bam.flagstat
       md5sum: 6d7934c303b15ce473f64d502b79984e