mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
83a500e6b0
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint * Initial commit for test data config * Rename test data * Include test config * Update indents * Update test for FastQC via config * Remove quotes of bottom-level variables * Use underscores in key names * Get tests working for fastp * Remove whitespace at beginning of file
29 lines
584 B
Text
29 lines
584 B
Text
params {
|
|
outdir = "output/"
|
|
publish_dir_mode = "copy"
|
|
enable_conda = false
|
|
singularity_pull_docker_container = false
|
|
}
|
|
|
|
process {
|
|
cpus = 2
|
|
memory = 3.GB
|
|
time = 48.h
|
|
}
|
|
|
|
if ("$PROFILE" == "singularity") {
|
|
singularity.enabled = true
|
|
singularity.autoMounts = true
|
|
} else if ("$PROFILE" == "conda") {
|
|
params.enable_conda = true
|
|
} else {
|
|
docker.enabled = true
|
|
docker.runOptions = '-u \$(id -u):\$(id -g)'
|
|
}
|
|
|
|
// Load test_data.config containing paths to test data
|
|
includeConfig 'test_data.config'
|
|
|
|
manifest {
|
|
nextflowVersion = '!>=20.11.0-edge'
|
|
}
|