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* new gubbins module * new gubbins module * new gubbins module * Update software/gubbins/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gubbins/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gubbins/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gubbins/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * new gubbins module * new gubbins module * new gubbins module * new gubbins module * new gubbins module * new gubbins module * new gubbins module * Update tests/config/test_data.config Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/software/gubbins/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * new gubbins module * new gubbins module Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
11 lines
278 B
Text
11 lines
278 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GUBBINS } from '../../../software/gubbins/main.nf' addParams( options: [:] )
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workflow test_gubbins {
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input = file(params.test_data['sarscov2']['genome']['test_fas'], checkIfExists: true)
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GUBBINS ( input )
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}
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