nf-core_modules/tests/software/samtools/index/test.yml at 46eb839553ceb155c495c0d3e2f05c95e2623161 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-11 12:43:09 +00:00

arontommi d162f21ab3

Update samtools modules with config logic (#381 )

* fixing paths for test

* fixing paths for test

* fixing pats to tests

* fixing paths to tests

* fixing paths to tests

* fixing paths for tests

* fixing paths for tests

* fixing paths for tests

* fixing paths fro tests

* fixing paths for tests

* indentation fixes

* typo

* renaming test results according to new file name

* replacing the md5sums

* fixing brackets

* replacing md5sums

* fixing md5sums

* fixing md5sums'

* Update test.yml

* Update test.yml

* Update test.yml

* Update test.yml

* Update test.yml

* Update test.yml

* Update test.yml

* Update test.yml

Co-authored-by: Ramon Rivera <ramon.rivera10@upr.edu>
Co-authored-by: Ramon Rivera <riveravicens@gmail.com>

2021-03-24 18:15:30 +00:00

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 - name: samtools index
   command: nextflow run tests/software/samtools/index -entry test_samtools_index -c tests/config/nextflow.config
   tags:
     - samtools
     - samtools_index
   files:
     - path: output/samtools/test_paired_end.sorted.bam.bai
       md5sum: 704c10dd1326482448ca3073fdebc2f4