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https://github.com/MillironX/nf-core_modules.git
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6d88f2da8c
* Rename process from STRINGTIE to STRINGTIE_STRINGTIE * Bump Stringtie version to 2.2.1 and remove empty files in tests * Fix tests for stringtie/merge Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
41 lines
1.9 KiB
YAML
41 lines
1.9 KiB
YAML
- name: stringtie stringtie forward
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command: nextflow run ./tests/modules/stringtie/stringtie/ -entry test_stringtie_forward -c ./tests/config/nextflow.config -c ./tests/modules/stringtie/stringtie/nextflow.config
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tags:
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- stringtie
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- stringtie/stringtie
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files:
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- path: ./output/stringtie/test.transcripts.gtf
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- path: ./output/stringtie/test.gene.abundance.txt
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md5sum: 7d8bce7f2a922e367cedccae7267c22e
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- path: ./output/stringtie/test.coverage.gtf
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- path: ./output/stringtie/test.ballgown/e_data.ctab
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md5sum: 6b4cf69bc03f3f69890f972a0e8b7471
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- path: ./output/stringtie/test.ballgown/i_data.ctab
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md5sum: be3abe09740603213f83d50dcf81427f
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- path: ./output/stringtie/test.ballgown/t_data.ctab
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md5sum: 3b66c065da73ae0dd41cc332eff6a818
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- path: ./output/stringtie/test.ballgown/i2t.ctab
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md5sum: 8a117c8aa4334b4c2d4711932b006fb4
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- path: ./output/stringtie/test.ballgown/e2t.ctab
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md5sum: e981c0038295ae54b63cedb1083f1540
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- name: stringtie stringtie reverse
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command: nextflow run ./tests/modules/stringtie/stringtie/ -entry test_stringtie_reverse -c ./tests/config/nextflow.config -c ./tests/modules/stringtie/stringtie/nextflow.config
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tags:
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- stringtie
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- stringtie/stringtie
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files:
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- path: ./output/stringtie/test.transcripts.gtf
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- path: ./output/stringtie/test.gene.abundance.txt
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md5sum: 7385b870b955dae2c2ab78a70cf05cce
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- path: ./output/stringtie/test.coverage.gtf
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- path: ./output/stringtie/test.ballgown/e_data.ctab
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md5sum: 879b6696029d19c4737b562e9d149218
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- path: ./output/stringtie/test.ballgown/i_data.ctab
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md5sum: be3abe09740603213f83d50dcf81427f
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- path: ./output/stringtie/test.ballgown/t_data.ctab
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md5sum: 3b66c065da73ae0dd41cc332eff6a818
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- path: ./output/stringtie/test.ballgown/i2t.ctab
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md5sum: 8a117c8aa4334b4c2d4711932b006fb4
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- path: ./output/stringtie/test.ballgown/e2t.ctab
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md5sum: e981c0038295ae54b63cedb1083f1540
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