mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
6bb4a6a7ee
* Implement PLINK_EXTRACT module * fix plink version number * Update main.nf * Update test_data.config * Update modules/plink/extract/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * just use one channel * fix test with new channel input Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
62 lines
1.6 KiB
YAML
62 lines
1.6 KiB
YAML
name: plink_extract
|
|
description: Subset plink bfiles with a text file of variant identifiers
|
|
keywords:
|
|
- extract
|
|
- plink
|
|
tools:
|
|
- plink:
|
|
description: Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
|
|
homepage: None
|
|
documentation: None
|
|
tool_dev_url: None
|
|
doi: ""
|
|
licence: ['GPL']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bed:
|
|
type: file
|
|
description: PLINK binary biallelic genotype table
|
|
pattern: "*.{bed}"
|
|
- bim:
|
|
type: file
|
|
description: PLINK extended MAP file
|
|
pattern: "*.{bim}"
|
|
- fam:
|
|
type: file
|
|
description: PLINK sample information file
|
|
pattern: "*.{fam}"
|
|
- variants:
|
|
type: file
|
|
description: A text file containing variant identifiers to keep (one per line)
|
|
pattern: "*.{keep}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- bed:
|
|
type: file
|
|
description: PLINK binary biallelic genotype table
|
|
pattern: "*.{bed}"
|
|
- bim:
|
|
type: file
|
|
description: PLINK extended MAP file
|
|
pattern: "*.{bim}"
|
|
- fam:
|
|
type: file
|
|
description: PLINK sample information file
|
|
pattern: "*.{fam}"
|
|
|
|
authors:
|
|
- "@nebfield"
|