mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
14 lines
580 B
Text
14 lines
580 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { CNVKIT_REFERENCE } from '../../../../modules/cnvkit/reference/main.nf'
|
|
|
|
workflow test_cnvkit_reference {
|
|
|
|
fasta = file(params.test_data['homo_sapiens']['genome']['genome_21_fasta'], checkIfExists: true)
|
|
targets = file(params.test_data['homo_sapiens']['genome']['genome_21_multi_interval_bed'], checkIfExists: true)
|
|
antitargets = file(params.test_data['homo_sapiens']['genome']['genome_21_multi_interval_antitarget_bed'], checkIfExists: true)
|
|
|
|
CNVKIT_REFERENCE ( fasta, targets, antitargets )
|
|
}
|